<<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html ======== >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

Velmeshev_et_al.1 CELLxGENE Census 2024-07-01 cutoff 0 MADs 5

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        This report was generated using MultiQC, version 1.28

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Velmeshev_et_al.1 CELLxGENE Census 2024-07-01 cutoff 0 MADs 5

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        This report has been generated by the PavlidisLab/sc-annotation-pipeline analysis pipeline.
        Report <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html generated on 2025-07-28, 12:34 PDT ======== generated on 2025-07-25, 14:35 PDT >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html based on data in: <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html /space/grp/rschwartz/rschwartz/cell_annotation_cortex.nf/work/21/ae21e043b616f4d3b179dc8b809363/Velmeshev_et_al.2 ======== /space/grp/rschwartz/rschwartz/cell_annotation_cortex.nf/work/98/915d17c7b8907a5b8b6ea8aa2fa9bb/Velmeshev_et_al.1 >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Sample Outlier Composition (outliers)

        Composition per sample of predicted outliers: outlier_mito = mitochondrial outliers; outlier_ribo = ribosomal outliers; outlier_hb = hemoglobin outliers; counts_outlier = outlier of log1p_n_genes ~ log1p_n_counts; predicted_doublet = doublets predicted by sc.pp.scrublet;.

        Created with MultiQC

        Sample cell type composition

        ========

        Sample cell type composition

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        Composition per sample of predicted cell types.

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        Created with MultiQC

        Leiden cluster composition (cell types)

        Leiden clustering performed on log-transformed data with top 2000 variable genes, 10 PCs, 30 neighbors, resolution = 0.3.

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        Created with MultiQC

        Leiden cluster composition (cell types)

        Leiden clustering performed on log-transformed data with top 2000 variable genes, 10 PCs, 30 neighbors, resolution = 0.3.

        Created with MultiQC

        Cell type outlier composition

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html class="hc-plot hc-bar plot-plot not_loaded not_rendered ">
        Created with MultiQC

        Cell type markers

        Expression of select markers. Count are averaged across cell-type labels and z-score normalized across genes.

        Created with MultiQC

        Cell type UMAP

        UMAP of the cell type labels, sample names and leiden clusters.

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5958 BA9 combined

        ========

        Velmeshev et al 1 | 5144 PFC Nova upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 6033 BA9 combined

        ========

        Velmeshev et al 1 | 5144 PFC Nova outliers

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5546 BA9 Nova combined

        ========

        Velmeshev et al 1 | 5936 PFC Nova outliers

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5893 BA9 combined

        ========

        Velmeshev et al 1 | 5945 PFC Nova upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5531 BA9 combined

        ========

        Velmeshev et al 1 | 5893 PFC Nova upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5939 BA9 combined

        ========

        Velmeshev et al 1 | 5408 PFC Nova outliers

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5981 BA9 Nova combined

        ========

        Velmeshev et al 1 | 5936 PFC Nova upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5565 BA9 combined

        ========

        Velmeshev et al 1 | 5879 PFC Nova outliers

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5976 BA9 combined

        ========

        Velmeshev et al 1 | 5419 PFC upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5294 BA9 combined

        ========

        Velmeshev et al 1 | 5879 PFC Nova upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5787 BA9 Nova combined

        ========

        Velmeshev et al 1 | 5403 PFC Nova outliers

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5978 BA9 combined

        ========

        Velmeshev et al 1 | 5419 PFC outliers

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5864 BA9 combined

        ========

        Velmeshev et al 1 | 5408 PFC Nova upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5577 BA9 combined

        ========

        Velmeshev et al 1 | 5403 PFC Nova upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 4341 BA46 combined

        ========

        Velmeshev et al 1 | 5945 PFC Nova outliers

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5387 BA9 combined

        ========

        Velmeshev et al 1 | 5893 PFC Nova outliers

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========
        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        Velmeshev et al 2 | 5841 BA9 combined

        ========

        Velmeshev et al 1 | 5278 PFC Nova upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html

        ========

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        >>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html style="display: none; margin-bottom: 7px; padding-bottom: 4px">
        AI Summary
        <<<<<<<< HEAD:images/multiqc/Velmeshev_et_al.2/multiqc_report.html
        ========

        Velmeshev et al 1 | 5538 PFC Nova outliers

        Velmeshev et al 1 | 5278 PFC Nova outliers

        Velmeshev et al 1 | 5538 PFC Nova upset

        >>>>>>>> development:images/multiqc/Velmeshev_et_al.1/Velmeshev_et_al.1-CELLxGENE-Census-2024-07-01-cutoff-0-MADs-5-_multiqc_report.html

        MultiQC v1.28 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.